Index

_

__create_signal() (Signal method)

A

activity_args_to_scenario() (in module pymgipsim.InputGeneration.activity_settings) as_array (Parameters attribute), [1], [2], [3], [4]

as_dict() (Events method), [1] (Signal method), [1]

B

basal_insulin (Inputs attribute)

BaseSolver (class in pymgipsim.ModelSolver.BaseSolvers), [1] bolus_insulin (Inputs attribute)

C

calculate_daily_energy_intake() (in module pymgipsim.InputGeneration.meal_energy_content), [1] calculate_meal_time_samples() (in module pymgipsim.InputGeneration.generate_carb_signal) calculate_snack_time_samples() (in module pymgipsim.InputGeneration.generate_carb_signal) carb (Inputs attribute) controller (class in pymgipsim.Utilities.Scenario), [1]

convert_inverse_hour_inverse_minute() (TimeUnits static method) create_simulation_folder() (in module pymgipsim.Utilities.simulation_folder), [1] create_simulation_name() (in module pymgipsim.Utilities.simulation_folder), [1] create_simulation_results_folder() (in module pymgipsim.Utilities.simulation_folder), [1] create_square_wave() (in module pymgipsim.InputGeneration.waves), [1]

D

demographic_info (class in pymgipsim.Utilities.Scenario), [1]

do_simulation() (MultiScaleSolver method), [1] duration (Events attribute), [1]

E

energy_expenditure (Inputs attribute), [1] energy_intake (Inputs attribute) estimate_energy_intake_from_g_cho() (in module pymgipsim.InputGeneration.meal_energy_content), [1]

estimate_g_cho_from_energy_intake() (in module pymgipsim.InputGeneration.meal_energy_content), [1] euler_single_step() (in module pymgipsim.ODESolvers.ode_solvers), [1] Events (class in pymgipsim.InputGeneration.signal), [1]

F

from_scenario_multiscale() (Model static method)

fromJSON() (Parameters method)

G

generate_activities() (in module pymgipsim.InputGeneration.activity_settings) generate_bodyweight_events() (in module pymgipsim.InputGeneration.generate_multiscale_inputs) generate_carb_absorption() (in module pymgipsim.InputGeneration.carb_energy_settings) generate_carb_events() (in module pymgipsim.InputGeneration.generate_carb_signal) generate_carb_magnitudes_multiscale() (in module pymgipsim.InputGeneration.generate_carb_signal) generate_carb_magnitudes_singlescale() (in module pymgipsim.InputGeneration.generate_carb_signal), [1] generate_carb_ranges_multiscale() (in module pymgipsim.InputGeneration.generate_carb_signal) generate_multiscale_inputs() (in module pymgipsim.InputGeneration.generate_multiscale_inputs) generate_normalized_pdfs() (in module pymgipsim.Probability.pdfs_samplers), [1]

generate_plots_main() (in module pymgipsim.generate_plots) generate_random_percentages() (in module pymgipsim.Probability.pdfs_samplers), [1] generate_sglt2i_events() (in module pymgipsim.InputGeneration.generate_sglt2i_signal) generate_system_information() (SimulationMetaData static method) generate_timestamp() (SimulationMetaData static method) get_basal_equilibrium() (Model static method), [1] get_most_recent_folder_in_directory() (in module pymgipsim.Utilities.simulation_folder), [1] GLUCOSE_KCAL_PER_GRAM (in module pymgipsim.Utilities.units_conversions_constants), [1] GlucoseUnits (class in pymgipsim.Utilities.units_conversions_constants)

I

initial_conditions (Model attribute) input_generation (class in pymgipsim.Utilities.Scenario), [1] inputs (class in pymgipsim.Utilities.Scenario), [1] Inputs (class in pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs) (class in pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs), [1] (class in pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs), [1] (class in pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs) (class in pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs)

inputs (Model attribute) InsulinUnits (class in pymgipsim.Utilities.units_conversions_constants)

L

load_scenario() (in module pymgipsim.Utilities.Scenario)

load_settings_file() (in module pymgipsim.Utilities.simulation_folder)

M

magnitude (Events attribute), [1] make_carb_settings() (in module pymgipsim.InputGeneration.carb_energy_settings) make_list_size_consistent() (in module pymgipsim.Utilities.dimensions) make_sglt2i_settings() (in module pymgipsim.InputGeneration.sglt2i_settings) MAX_BW (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_CI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_EGP (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_GEZI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_P2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_SI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_TAU1 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_TAU2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_TAUD (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MAX_VG (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MetricUnits (class in pymgipsim.Utilities.units_conversions_constants) MIN_BW (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_CI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_EGP (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_GEZI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_P2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_SI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_TAU1 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_TAU2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_TAUD (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] MIN_VG (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] model (class in pymgipsim.Utilities.Scenario), [1] Model (class in pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model) (class in pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model) (class in pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model) (class in pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model) (class in pymgipsim.VirtualPatient.Models.T1DM.IVP.Model) model() (Model static method) module pymgipsim pymgipsim.generate_plots pymgipsim.InputGeneration pymgipsim.InputGeneration.activity_settings pymgipsim.InputGeneration.carb_energy_settings pymgipsim.InputGeneration.generate_carb_signal pymgipsim.InputGeneration.generate_multiscale_inputs pymgipsim.InputGeneration.generate_sglt2i_signal pymgipsim.InputGeneration.meal_energy_content pymgipsim.InputGeneration.sglt2i_settings pymgipsim.InputGeneration.signal pymgipsim.InputGeneration.waves pymgipsim.ModelSolver pymgipsim.ModelSolver.BaseSolvers pymgipsim.ModelSolver.multiscale pymgipsim.ODESolvers pymgipsim.ODESolvers.ode_solvers pymgipsim.Plotting pymgipsim.Plotting.plotting pymgipsim.Probability pymgipsim.Probability.distributions pymgipsim.Probability.pdfs_samplers pymgipsim.Settings pymgipsim.Settings.DefaultSettings pymgipsim.Settings.settings_args_to_scenario pymgipsim.Utilities pymgipsim.Utilities.dimensions pymgipsim.Utilities.metadata pymgipsim.Utilities.paths pymgipsim.Utilities.Scenario pymgipsim.Utilities.simulation_folder pymgipsim.Utilities.Timestamp pymgipsim.Utilities.units_conversions_constants pymgipsim.VirtualPatient pymgipsim.VirtualPatient.Models pymgipsim.VirtualPatient.Models.Multiscale pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.CONSTANTS pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.States pymgipsim.VirtualPatient.Models.Physact pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.CONSTANTS pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.CONSTANTS pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States pymgipsim.VirtualPatient.Models.T1DM pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.States pymgipsim.VirtualPatient.Models.T1DM.IVP pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs pymgipsim.VirtualPatient.Models.T1DM.IVP.Model pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters pymgipsim.VirtualPatient.Models.T1DM.IVP.States

mscale (class in pymgipsim.Utilities.Scenario), [1] MultiScaleSolver (class in pymgipsim.ModelSolver.multiscale), [1] MultiscaleSolverBase (class in pymgipsim.ModelSolver.multiscale), [1]

N

NOMINAL_AG (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1] NOMINAL_BW (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1] (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_CI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_EGP (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_GEZI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_k12 (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1] NOMINAL_ka1 (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1]

NOMINAL_ka2 (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1] NOMINAL_ka3 (in module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS), [1] NOMINAL_P2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_SI (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_TAU1 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_TAU2 (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_TAUD (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] NOMINAL_VG (in module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS), [1] normal_pdf() (in module pymgipsim.Probability.distributions), [1]

O

output_equilibrium() (Model static method)

output_state (Model attribute), [1], [2], [3], [4]

P

Parameters (class in pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters) parameters (Model attribute) patient (class in pymgipsim.Utilities.Scenario), [1] plot_all_states() (in module pymgipsim.Plotting.plotting), [1] plot_bgc() (in module pymgipsim.Plotting.plotting), [1] plot_bw() (in module pymgipsim.Plotting.plotting) plot_input_signals() (in module pymgipsim.Plotting.plotting) plot_subject_response() (in module pymgipsim.Plotting.plotting) preprocessing() (Model method) pymgipsim module pymgipsim.generate_plots module pymgipsim.InputGeneration module pymgipsim.InputGeneration.activity_settings module pymgipsim.InputGeneration.carb_energy_settings module pymgipsim.InputGeneration.generate_carb_signal module pymgipsim.InputGeneration.generate_multiscale_inputs module pymgipsim.InputGeneration.generate_sglt2i_signal module pymgipsim.InputGeneration.meal_energy_content module pymgipsim.InputGeneration.sglt2i_settings module pymgipsim.InputGeneration.signal module pymgipsim.InputGeneration.waves module pymgipsim.ModelSolver module pymgipsim.ModelSolver.BaseSolvers module pymgipsim.ModelSolver.multiscale module pymgipsim.ODESolvers module pymgipsim.ODESolvers.ode_solvers module pymgipsim.Plotting module pymgipsim.Plotting.plotting module pymgipsim.Probability module pymgipsim.Probability.distributions module pymgipsim.Probability.pdfs_samplers module pymgipsim.Settings module pymgipsim.Settings.DefaultSettings module pymgipsim.Settings.settings_args_to_scenario module pymgipsim.Utilities module pymgipsim.Utilities.dimensions module pymgipsim.Utilities.metadata module pymgipsim.Utilities.paths module pymgipsim.Utilities.Scenario module pymgipsim.Utilities.simulation_folder module pymgipsim.Utilities.Timestamp module

pymgipsim.Utilities.units_conversions_constants module pymgipsim.VirtualPatient module pymgipsim.VirtualPatient.Models module pymgipsim.VirtualPatient.Models.Multiscale module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.CONSTANTS module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Inputs module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Model module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.Parameters module pymgipsim.VirtualPatient.Models.Multiscale.BodyWeight.States module pymgipsim.VirtualPatient.Models.Physact module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.CONSTANTS module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Inputs module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Model module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.Parameters module pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.CONSTANTS module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Inputs module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Model module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.Parameters module pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States module pymgipsim.VirtualPatient.Models.T1DM module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.CONSTANTS module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Inputs module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Model module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.Parameters module pymgipsim.VirtualPatient.Models.T1DM.ExtHovorka.States module pymgipsim.VirtualPatient.Models.T1DM.IVP module pymgipsim.VirtualPatient.Models.T1DM.IVP.CONSTANTS module pymgipsim.VirtualPatient.Models.T1DM.IVP.Inputs module pymgipsim.VirtualPatient.Models.T1DM.IVP.Model module pymgipsim.VirtualPatient.Models.T1DM.IVP.Parameters module pymgipsim.VirtualPatient.Models.T1DM.IVP.States module

R

Ra (Inputs attribute)

rk4_single_step() (in module pymgipsim.ODESolvers.ode_solvers), [1]

S

sample_generator() (in module pymgipsim.Probability.pdfs_samplers) sample_pdfs() (in module pymgipsim.Probability.pdfs_samplers), [1] sampled_signal (Signal attribute), [1] sampling_time (Model attribute) save_scenario() (in module pymgipsim.Utilities.Scenario) save_to_xls() (in module pymgipsim.Utilities.simulation_folder) scenario (class in pymgipsim.Utilities.Scenario), [1]

settings (class in pymgipsim.Utilities.Scenario), [1] settings_args_to_scenario() (in module pymgipsim.Settings.settings_args_to_scenario) Signal (class in pymgipsim.InputGeneration.signal), [1] SimulationMetaData (class in pymgipsim.Utilities.metadata) start_time (Events attribute), [1] States (class in pymgipsim.VirtualPatient.Models.Physact.Activity2Heartrate.States) (class in pymgipsim.VirtualPatient.Models.Physact.Heartrate2Energyexp.States) states (Model attribute)

T

taud (Inputs attribute) time (Model attribute) time_str_to_float() (in module pymgipsim.InputGeneration.activity_settings)

Timestamp (class in pymgipsim.Utilities.Timestamp) TimeUnits (class in pymgipsim.Utilities.units_conversions_constants) toJSON() (Inputs method), [1], [2], [3], [4], [5], [6] truncated_normal_pdf() (in module pymgipsim.Probability.distributions), [1]

U

uFastCarbs (Inputs attribute), [1] uHR (Inputs attribute), [1] uInsulin (Inputs attribute), [1] uniform_pdf() (in module pymgipsim.Probability.distributions), [1]

UnitConversion (class in pymgipsim.Utilities.units_conversions_constants) unknown (Inputs attribute) urinary_glucose_excretion (Inputs attribute) uSlowCarbs (Inputs attribute), [1]